Package index
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findCisSNPs() - Find cis SNPs around a set of Variable Methylated Loci (VML)
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findVML() - Identify Variable Methylated Loci in microarrays
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lmGE() - Fit linear G, E, G+E and GxE models and select the winning model
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map_revmap_names() - Map revmap column to probe names after reducing a GenomicRanges object
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medCorVMR() - Compute the median probe methylation pearson correlation for each Variable Methylated Region (VMR).
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nullDistGE() - Simulate a delta R squared null distribution of G and E effects on DNAme variability
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selectVariables() - Selection of relevant environment and genotype variables associated with Variably Methylated Loci (VML)
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summarizeVML() - Summarize the methylation states of Variable Methylated Loci (VML)
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test_covariates - Concomitant variable example data set
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test_environmental_matrix - Environmental exposures example data set
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test_genotype_information - Genotype metadata example data set
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test_genotype_matrix - Genotype matrix example
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test_methylation_data - Methylation data matrix example
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ultrastable_cpgs - Ultrastable probes