Function reference
-
findCisSNPs() - Find cis SNPs around a set of Variable Methylated Regions (VMRs)
-
findVMRs() - Identify Variable Methylated Regions in microarrays
-
lmGE() - Fit linear G, E, G+E and GxE models and select the winning model
-
map_revmap_names() - Map revmap column to probe names after reducing a GenomicRanges object
-
medCorVMR() - Compute the median probe methylation pearson correlation for each Variable Methylated Region (VMR).
-
nullDistGE() - Simulate a delta R squared null distribution of G and E effects on DNAme variability
-
selectVariables() - Selection of environment and genotype variables for Variable Methylated Regions (VMRs)
-
summarizeVMRs() - Summarize the methylation states of Variable Methylated Regions (VMRs)
-
test_array_manifest - Array manifest example data set
-
test_covariates - Concomitant variable example data set
-
test_environmental_matrix - Environmental exposures example data set
-
test_genotype_information - Genotype metadata example data set
-
test_genotype_matrix - Genotype matrix example
-
test_methylation_data - Methylation data matrix example